記事一覧
Lasso回帰による変数選択
fURS = TUL0110$flexiblebasket.yes
age = TUL0110$age
bmi = TUL0110$bmi.imputed
diabetes = TUL0110$diabetes
sex = TUL0110$sex.1f
ps = TUL0110$ps.declined
size = TUL0110$renoureter.size.revised
burden =
Mac Singlecell
MAC terminal
common@h21 ~ % cd /Users/common/Documents/scRNAseq01
common@h21 scRNAseq01 % split -l 1000 ccRCC_scRNASeq_NormalizedCounts1.txt ccRCC_scRNASeq_NormalizedCounts1.txt.
common@h21 scRNAseq01
consensus cluster
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ConsensusClusterPlus")
library(ALL)
data(ALL)
d=exprs(ALL)
d[1:5,1:5]
# 12625gene 128 pat
Time dependant ROC
library(survivalROC)
#####dataにdata.frameいれる#####
data(FTUL1028)
###365を別の日付に＃＃＃
cutoff <- 365
FTUL= survivalROC(Stime=FTUL1028$intervention.days,status=FTUL1028$intervention.cencor,
marker = FT
KMのPlotのマークを変える
km <- NULL
km.summary.table <- NULL
km <- survfit(Surv((intervention.days/30.4375),intervention.event==1)~1, data=FTUL1107, na.action
= na.omit, conf.type="log-log")
windows(width=7, height=7); par(